Package: metabodecon 1.2.6
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metabodecon: Deconvolution and Alignment of 1d NMR Spectra
A framework for deconvolution, alignment and postprocessing of 1-dimensional (1d) nuclear magnetic resonance (NMR) spectra, resulting in a data matrix of aligned signal integrals. The deconvolution part uses the algorithm described in Koh et al. (2009) <doi:10.1016/j.jmr.2009.09.003>. The alignment part is based on functions from the 'speaq' package, described in Beirnaert et al. (2018) <doi:10.1371/journal.pcbi.1006018> and Vu et al. (2011) <doi:10.1186/1471-2105-12-405>. A detailed description and evaluation of an early version of the package, 'MetaboDecon1D v0.2.2', can be found in Haeckl et al. (2021) <doi:10.3390/metabo11070452>.
Authors:
metabodecon_1.2.6.tar.gz
metabodecon_1.2.6.zip(r-4.5)metabodecon_1.2.6.zip(r-4.4)metabodecon_1.2.6.zip(r-4.3)
metabodecon_1.2.6.tgz(r-4.5-any)metabodecon_1.2.6.tgz(r-4.4-any)metabodecon_1.2.6.tgz(r-4.3-any)
metabodecon_1.2.6.tar.gz(r-4.5-noble)metabodecon_1.2.6.tar.gz(r-4.4-noble)
metabodecon_1.2.6.tgz(r-4.4-emscripten)metabodecon_1.2.6.tgz(r-4.3-emscripten)
metabodecon.pdf |metabodecon.html✨
metabodecon/json (API)
NEWS
# Install 'metabodecon' in R: |
install.packages('metabodecon', repos = c('https://spang-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/spang-lab/metabodecon/issues
Pkgdown site:https://spang-lab.github.io
Last updated 1 months agofrom:7803136138. Checks:4 OK, 4 ERROR. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 21 2025 |
R-4.5-win | ERROR | Feb 21 2025 |
R-4.5-mac | OK | Feb 21 2025 |
R-4.5-linux | OK | Feb 21 2025 |
R-4.4-win | ERROR | Feb 21 2025 |
R-4.4-mac | OK | Feb 21 2025 |
R-4.3-win | ERROR | Feb 21 2025 |
R-4.3-mac | ERROR | Feb 21 2025 |
Exports:alignas_decon0as_decon1as_decon2as_decons0as_decons1as_decons2as_ideconas_ideconsas_ispecas_ispecsas_spectraas_spectrumcalculate_lorentz_curvescombine_peaksconvert_posconvert_widthdatadirdatadir_persistentdatadir_tempdeconvolutedohClusterdownload_example_datasetsdraw_spectrumevalwithgen_feat_matgenerate_lorentz_curvesgenerate_lorentz_curves_simget_data_dirget_ppm_rangeis_alignis_alignsis_decon0is_decon1is_decon2is_decons0is_decons1is_decons2is_ideconis_ideconsis_ispecis_ispecsis_spectrais_spectrummake_spectrummetabodecon_fileMetaboDecon1Dplot_lorentz_curves_save_as_pngplot_spectraplot_spectrumplot_spectrum_superposition_save_as_pngplot_tripletsread_spectraread_spectrumsimulate_spectrumspeaq_aligntmpdirtransptreewidth
Dependencies:askpasscliclustercodetoolscolorspacecurldata.tabledigestdoRNGdoSNOWfansifarverforeachggplot2gluegridExtragtablehttrimputeisobanditeratorsitertoolsjsonlitelabelinglatticelifecyclemagrittrMASSMassSpecWaveletmathjaxrMatrixmgcvmimemissForestmunsellnlmeopensslpillarpkgconfigplyrR6randomForestRColorBrewerRcppRcppArmadilloRcppGSLRcppParallelRcppZigguratreadJDXreshape2Rfastrlangrngtoolsrvestscalesselectrsnowspeaqstringistringrsystibbletoscutilutf8vctrsviridisLitewithrxml2